A monopoly could theoretically earn negative profits in the short run due to shifting demand — but in the long run such a firm would shut down and therefore no monopoly would exist.
A monopoly maximizes profit by choosing the quantity where Marginal Revenue (MR) = Marginal Cost (MC). In the short-run if this quantity has an Average Total Cost (ATC) greater than the corresponding price on the demand curve then the firm would earn negative profit ([Price – Average Total Cost] x Quantity).
I am not aware of any practical examples of this type of situation but it’s a great question — and I would love to see an example if anyone has one. I think the closest example might be a monopoly that becomes obsolete with the development of a new technology or substitute product. By definition no substitutes exist for a monopoly so the monopoly would cease to exist just as it might experience a loss.